IL_7OOD_017

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7OOD|1|3|G|836, 7OOD|1|3|G|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_017 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1354

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7OOD|1|3|G|709
7OOD|1|3|A|710
7OOD|1|3|A|711
7OOD|1|3|A|712
7OOD|1|3|C|713
*
7OOD|1|3|G|834
7OOD|1|3|U|835
7OOD|1|3|G|836
7OOD|1|3|A|837
7OOD|1|3|U|838
7OOD|1|3|A|839
7OOD|1|3|G|840
7OOD|1|3|C|841

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain k

50S ribosomal protein L15