IL_7OOD_027

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUACU*AAAC

Length

10 nucleotides

Bulged bases

7OOD|1|3|U|902

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_027 not in the Motif Atlas

Geometric match to IL_4WF9_033

Geometric discrepancy: 0.1607

The information below is about IL_4WF9_033

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

7OOD|1|3|G|900
7OOD|1|3|C|901
7OOD|1|3|U|902
7OOD|1|3|A|903
7OOD|1|3|C|904
7OOD|1|3|U|905
*
7OOD|1|3|A|946
7OOD|1|3|A|947
7OOD|1|3|A|948
7OOD|1|3|C|949

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L27