IL_7OOD_038

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

7OOD|1|3|U|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_038 not in the Motif Atlas

Geometric match to IL_5J7L_285

Geometric discrepancy: 0.3711

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

7OOD|1|3|G|1094
7OOD|1|3|U|1095
7OOD|1|3|U|1096
7OOD|1|3|G|1097
*
7OOD|1|3|C|1111
7OOD|1|3|A|1112
7OOD|1|3|U|1113
7OOD|1|3|C|1114

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L11