IL_7OOD_039

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7OOD|1|3|A|1123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_039 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.3803

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7OOD|1|3|G|1122
7OOD|1|3|A|1123
7OOD|1|3|G|1124
7OOD|1|3|U|1125
7OOD|1|3|G|1126
*
7OOD|1|3|C|1135
7OOD|1|3|U|1136
7OOD|1|3|C|1137

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain h

50S ribosomal protein L11