IL_7OOD_044

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACCAG*CUU

Length

8 nucleotides

Bulged bases

7OOD|1|3|U|1360

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_044 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.2631

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

7OOD|1|3|A|1347
7OOD|1|3|C|1348
7OOD|1|3|C|1349
7OOD|1|3|A|1350
7OOD|1|3|G|1351
*
7OOD|1|3|C|1359
7OOD|1|3|U|1360
7OOD|1|3|U|1361

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain r

50S ribosomal protein L22

Chain s

50S ribosomal protein L23