IL_7OOD_048

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AC*GGUUAAU

Length

9 nucleotides

Bulged bases

7OOD|1|3|U|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_048 not in the Motif Atlas

Geometric match to IL_5TBW_036

Geometric discrepancy: 0.3783

The information below is about IL_5TBW_036

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_42230.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7OOD|1|3|A|1443
7OOD|1|3|C|1444
*
7OOD|1|3|G|1615
7OOD|1|3|G|1616
7OOD|1|3|U|1617
7OOD|1|3|U|1618
7OOD|1|3|A|1619
7OOD|1|3|A|1620
7OOD|1|3|U|1621

Current chains

Chain 3

23S ribosomal RNA

Nearby chains