IL_7OOD_050

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*CAUGC

Length

9 nucleotides

Bulged bases

7OOD|1|3|U|1593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_050 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.2487

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7OOD|1|3|G|1460
7OOD|1|3|A|1461
7OOD|1|3|A|1462
7OOD|1|3|G|1463
*
7OOD|1|3|C|1591
7OOD|1|3|A|1592
7OOD|1|3|U|1593
7OOD|1|3|G|1594
7OOD|1|3|C|1595

Current chains

Chain 3

23S ribosomal RNA

Nearby chains