IL_7OOD_051

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUUC*GUAUUAA

Length

12 nucleotides

Bulged bases

7OOD|1|3|A|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_051 not in the Motif Atlas

Geometric match to IL_8C3A_401

Geometric discrepancy: 0.3936

The information below is about IL_8C3A_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02934.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7OOD|1|3|U|1465
7OOD|1|3|U|1466
7OOD|1|3|U|1467
7OOD|1|3|U|1468
7OOD|1|3|C|1469
*
7OOD|1|3|G|1583
7OOD|1|3|U|1584
7OOD|1|3|A|1585
7OOD|1|3|U|1586
7OOD|1|3|U|1587
7OOD|1|3|A|1588
7OOD|1|3|A|1589

Current chains

Chain 3

23S ribosomal RNA

Nearby chains