IL_7OOD_056

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_056 not in the Motif Atlas

Geometric match to IL_5J7L_303

Geometric discrepancy: 0.1987

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7OOD|1|3|C|1552
7OOD|1|3|G|1553
7OOD|1|3|A|1554
7OOD|1|3|G|1555
*
7OOD|1|3|C|1575
7OOD|1|3|G|1576
7OOD|1|3|A|1577
7OOD|1|3|A|1578
7OOD|1|3|G|1579

Current chains

Chain 3

23S ribosomal RNA

Nearby chains