IL_7OOD_060

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

7OOD|1|3|G|1999

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_060 not in the Motif Atlas

Geometric match to IL_7A0S_062

Geometric discrepancy: 0.2558

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

7OOD|1|3|A|1703
7OOD|1|3|C|1704
7OOD|1|3|U|1705
7OOD|1|3|C|1706
7OOD|1|3|U|1707
7OOD|1|3|G|1708
*
7OOD|1|3|C|1997
7OOD|1|3|U|1998
7OOD|1|3|G|1999
7OOD|1|3|U|2000

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain j

50S ribosomal protein L14