IL_7OOD_082

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAGAGAAUAG*CC

Length

13 nucleotides

Bulged bases

7OOD|1|3|A|2123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_082 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.2301

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7OOD|1|3|G|2117
7OOD|1|3|U|2118
7OOD|1|3|A|2119
7OOD|1|3|G|2120
7OOD|1|3|A|2121
7OOD|1|3|G|2122
7OOD|1|3|A|2123
7OOD|1|3|A|2124
7OOD|1|3|U|2125
7OOD|1|3|A|2126
7OOD|1|3|G|2127
*
7OOD|1|3|C|2186
7OOD|1|3|C|2187

Current chains

Chain 3

23S ribosomal RNA

Nearby chains