IL_7OOD_086

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*UGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_086 not in the Motif Atlas

Homologous match to IL_8VTW_087

Geometric discrepancy: 0.5018

The information below is about IL_8VTW_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7OOD|1|3|C|2305
7OOD|1|3|A|2306
7OOD|1|3|G|2307
*
7OOD|1|3|U|2325
7OOD|1|3|G|2326
7OOD|1|3|U|2327
7OOD|1|3|A|2328
7OOD|1|3|G|2329

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain d

50S ribosomal protein L5

Chain n

50S ribosomal protein L18