IL_7OOD_095

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7OOD|1|3|G|2584, 7OOD|1|3|A|2585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_095 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1537

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7OOD|1|3|C|2518
7OOD|1|3|U|2519
7OOD|1|3|C|2520
*
7OOD|1|3|G|2582
7OOD|1|3|U|2583
7OOD|1|3|G|2584
7OOD|1|3|A|2585
7OOD|1|3|G|2586

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain y

50S ribosomal protein L32