IL_7OOD_100

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_100 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1381

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7OOD|1|3|C|2660
7OOD|1|3|U|2661
7OOD|1|3|A|2662
7OOD|1|3|G|2663
7OOD|1|3|U|2664
7OOD|1|3|A|2665
7OOD|1|3|C|2666
*
7OOD|1|3|G|2671
7OOD|1|3|G|2672
7OOD|1|3|A|2673
7OOD|1|3|C|2674
7OOD|1|3|C|2675
7OOD|1|3|G|2676

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L6