IL_7OOD_102

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCUC*GGUAG

Length

10 nucleotides

Bulged bases

7OOD|1|3|C|2697, 7OOD|1|3|U|2698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_102 not in the Motif Atlas

Geometric match to IL_4WF9_102

Geometric discrepancy: 0.157

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

7OOD|1|3|U|2695
7OOD|1|3|G|2696
7OOD|1|3|C|2697
7OOD|1|3|U|2698
7OOD|1|3|C|2699
*
7OOD|1|3|G|2726
7OOD|1|3|G|2727
7OOD|1|3|U|2728
7OOD|1|3|A|2729
7OOD|1|3|G|2730

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19