IL_7OOD_103

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UU*ACCG

Length

6 nucleotides

Bulged bases

7OOD|1|3|C|2720, 7OOD|1|3|C|2721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_103 not in the Motif Atlas

Geometric match to IL_4WF9_103

Geometric discrepancy: 0.1855

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

7OOD|1|3|U|2703
7OOD|1|3|U|2704
*
7OOD|1|3|A|2719
7OOD|1|3|C|2720
7OOD|1|3|C|2721
7OOD|1|3|G|2722

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19