IL_7OOD_104

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUAAA*UGAAAC

Length

12 nucleotides

Bulged bases

7OOD|1|3|A|2773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_104 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.1724

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7OOD|1|3|G|2745
7OOD|1|3|A|2746
7OOD|1|3|U|2747
7OOD|1|3|A|2748
7OOD|1|3|A|2749
7OOD|1|3|A|2750
*
7OOD|1|3|U|2770
7OOD|1|3|G|2771
7OOD|1|3|A|2772
7OOD|1|3|A|2773
7OOD|1|3|A|2774
7OOD|1|3|C|2775

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain e

50S ribosomal protein L6

Chain i

50S ribosomal protein L13