IL_7OOD_117

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_117 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.1344

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7OOD|1|3|C|1379
7OOD|1|3|U|1380
7OOD|1|3|A|1381
7OOD|1|3|A|1382
7OOD|1|3|G|1383
*
7OOD|1|3|C|1404
7OOD|1|3|G|1405
7OOD|1|3|A|1406
7OOD|1|3|U|1407
7OOD|1|3|G|1408

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain a

50S ribosomal protein L2