IL_7OOD_118

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUG*CUAG

Length

9 nucleotides

Bulged bases

7OOD|1|3|U|1448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_118 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.4028

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7OOD|1|3|U|1445
7OOD|1|3|G|1446
7OOD|1|3|A|1447
7OOD|1|3|U|1448
7OOD|1|3|G|1449
*
7OOD|1|3|C|1611
7OOD|1|3|U|1612
7OOD|1|3|A|1613
7OOD|1|3|G|1614

Current chains

Chain 3

23S ribosomal RNA

Nearby chains