IL_7OOD_125
3D structure
- PDB id
- 7OOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAAAACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 7OOD|1|3|A|1081
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OOD_125 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.2726
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7OOD|1|3|C|1078
7OOD|1|3|U|1079
7OOD|1|3|A|1080
7OOD|1|3|A|1081
7OOD|1|3|A|1082
7OOD|1|3|A|1083
7OOD|1|3|C|1084
7OOD|1|3|A|1085
7OOD|1|3|G|1086
*
7OOD|1|3|U|1143
7OOD|1|3|C|1144
7OOD|1|3|G|1145
7OOD|1|3|A|1146
7OOD|1|3|G|1147
Current chains
- Chain 3
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L36
- Chain e
- 50S ribosomal protein L6
- Chain g
- 50S ribosomal protein L10
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