IL_7OPE_043

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

7OPE|1|A|U|1107

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_043 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.2044

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

7OPE|1|A|G|1105
7OPE|1|A|U|1106
7OPE|1|A|U|1107
7OPE|1|A|G|1108
*
7OPE|1|A|C|1122
7OPE|1|A|A|1123
7OPE|1|A|C|1124
7OPE|1|A|C|1125

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L11

Chain Q

50S ribosomal protein L16