IL_7OPE_080

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

7OPE|1|A|A|1967, 7OPE|1|A|U|1973, 7OPE|1|A|C|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_080 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1263

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

7OPE|1|A|C|1963
7OPE|1|A|G|1964
7OPE|1|A|A|1965
7OPE|1|A|A|1966
7OPE|1|A|A|1967
7OPE|1|A|U|1968
7OPE|1|A|U|1969
7OPE|1|A|C|1970
7OPE|1|A|C|1971
7OPE|1|A|U|1972
7OPE|1|A|U|1973
7OPE|1|A|G|1974
*
7OPE|1|A|C|1990
7OPE|1|A|C|1991
7OPE|1|A|C|1992
7OPE|1|A|G|1993

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2