IL_7OSA_028

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7OSA|1|18S|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_028 not in the Motif Atlas

Homologous match to IL_8C3A_424

Geometric discrepancy: 0.2499

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

7OSA|1|18S|G|557
7OSA|1|18S|U|558
7OSA|1|18S|C|559
*
7OSA|1|18S|G|586
7OSA|1|18S|C|587

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS30

40S ribosomal protein S30

Chain uS12

40S ribosomal protein S23

Chain uS3

BJ4_G0045400.mRNA.1.CDS.1