IL_7OSA_041

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_041 not in the Motif Atlas

Homologous match to IL_8P9A_419

Geometric discrepancy: 0.112

The information below is about IL_8P9A_419

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7OSA|1|18S|G|871
7OSA|1|18S|G|872
7OSA|1|18S|U|873
7OSA|1|18S|C|874
*
7OSA|1|18S|G|953
7OSA|1|18S|G|954
7OSA|1|18S|A|955
7OSA|1|18S|C|956

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS1

40S ribosomal protein S1

Chain eS27

40S ribosomal protein S27-A

Chain uS15

40S ribosomal protein S13