IL_7OSA_045

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

7OSA|1|18S|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_045 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1099

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7OSA|1|18S|G|895
7OSA|1|18S|U|896
7OSA|1|18S|C|897
7OSA|1|18S|A|898
7OSA|1|18S|G|899
*
7OSA|1|18S|C|910
7OSA|1|18S|U|911
7OSA|1|18S|U|912
7OSA|1|18S|G|913
7OSA|1|18S|G|914
7OSA|1|18S|A|915
7OSA|1|18S|U|916
7OSA|1|18S|U|917

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain 25S

Large subunit ribosomal RNA; LSU rRNA

Chain eS1

40S ribosomal protein S1

Chain uS11

40S ribosomal protein S14-A