IL_7OSA_056

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_056 not in the Motif Atlas

Homologous match to IL_8P9A_433

Geometric discrepancy: 0.127

The information below is about IL_8P9A_433

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7OSA|1|18S|G|1178
7OSA|1|18S|G|1179
*
7OSA|1|18S|C|1459
7OSA|1|18S|A|1460
7OSA|1|18S|C|1461

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain PSIT

Transfer RNA; tRNA

Chain uS13

40S ribosomal protein S18-B

Chain uS19

40S ribosomal protein S15