IL_7OSA_084

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_084 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.119

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7OSA|1|18S|A|1678
7OSA|1|18S|G|1679
7OSA|1|18S|G|1680
7OSA|1|18S|A|1681
7OSA|1|18S|U|1682
*
7OSA|1|18S|A|1719
7OSA|1|18S|G|1720
7OSA|1|18S|A|1721
7OSA|1|18S|A|1722
7OSA|1|18S|U|1723

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS6

40S ribosomal protein S6

Chain eS8

40S ribosomal protein S8