IL_7OSA_127

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_127 not in the Motif Atlas

Homologous match to IL_8P9A_270

Geometric discrepancy: 0.0983

The information below is about IL_8P9A_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7OSA|1|25S|A|1009
7OSA|1|25S|G|1010
7OSA|1|25S|A|1011
*
7OSA|1|25S|U|1039
7OSA|1|25S|A|1040
7OSA|1|25S|U|1041

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain uL16

60S ribosomal protein L10

Chain uL18

60S ribosomal protein L5