IL_7OSA_135
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7OSA|1|25S|C|1196, 7OSA|1|25S|A|1302, 7OSA|1|25S|U|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSA_135 not in the Motif Atlas
- Homologous match to IL_8C3A_055
- Geometric discrepancy: 0.0644
- The information below is about IL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7OSA|1|25S|G|1194
7OSA|1|25S|A|1195
7OSA|1|25S|C|1196
7OSA|1|25S|A|1197
7OSA|1|25S|C|1198
7OSA|1|25S|C|1199
7OSA|1|25S|A|1200
7OSA|1|25S|C|1201
7OSA|1|25S|A|1202
7OSA|1|25S|A|1203
7OSA|1|25S|A|1204
7OSA|1|25S|A|1205
*
7OSA|1|25S|U|1299
7OSA|1|25S|G|1300
7OSA|1|25S|A|1301
7OSA|1|25S|A|1302
7OSA|1|25S|A|1303
7OSA|1|25S|A|1304
7OSA|1|25S|U|1305
7OSA|1|25S|G|1306
7OSA|1|25S|G|1307
7OSA|1|25S|A|1308
7OSA|1|25S|U|1309
7OSA|1|25S|G|1310
7OSA|1|25S|G|1311
7OSA|1|25S|C|1312
7OSA|1|25S|G|1313
7OSA|1|25S|C|1314
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain eL33
- BJ4_G0025510.mRNA.1.CDS.1
- Chain eL40
- Ubiquitin
- Chain uL13
- 60S ribosomal protein L16-A
- Chain uL16
- 60S ribosomal protein L10
- Chain uL3
- 60S ribosomal protein L3
- Chain uL30
- 60S ribosomal protein L7-A
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