IL_7OSA_136

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7OSA|1|25S|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_136 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.1017

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7OSA|1|25S|G|1207
7OSA|1|25S|U|1208
7OSA|1|25S|G|1209
*
7OSA|1|25S|C|1296
7OSA|1|25S|C|1297

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain eL20

60S ribosomal protein L20

Chain eL40

Ubiquitin

Chain uL16

60S ribosomal protein L10

Chain uL6

60S ribosomal protein L9-A