IL_7OSA_148

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

7OSA|1|25S|U|1820, 7OSA|1|25S|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_148 not in the Motif Atlas

Geometric match to IL_7ELQ_002

Geometric discrepancy: 0.1998

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7OSA|1|25S|G|1623
7OSA|1|25S|G|1624
7OSA|1|25S|A|1625
*
7OSA|1|25S|U|1818
7OSA|1|25S|U|1819
7OSA|1|25S|U|1820
7OSA|1|25S|U|1821
7OSA|1|25S|C|1822

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL34

60S ribosomal protein L34-A

Chain eL38

BJ4_G0032190.mRNA.1.CDS.1