IL_7OSA_173

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

7OSA|1|25S|A|2281, 7OSA|1|25S|C|2287, 7OSA|1|25S|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_173 not in the Motif Atlas

Homologous match to IL_8P9A_318

Geometric discrepancy: 0.0752

The information below is about IL_8P9A_318

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

7OSA|1|25S|C|2277
7OSA|1|25S|C|2278
7OSA|1|25S|A|2279
7OSA|1|25S|A|2280
7OSA|1|25S|A|2281
7OSA|1|25S|U|2282
7OSA|1|25S|G|2283
7OSA|1|25S|C|2284
7OSA|1|25S|C|2285
7OSA|1|25S|U|2286
7OSA|1|25S|C|2287
7OSA|1|25S|G|2288
*
7OSA|1|25S|C|2304
7OSA|1|25S|G|2305
7OSA|1|25S|C|2306
7OSA|1|25S|G|2307

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 18S

Small subunit ribosomal RNA; SSU rRNA

Chain eL41

eL41