3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUUA*UUUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_008 not in the Motif Atlas
Homologous match to IL_4V88_391
Geometric discrepancy: 0.1153
The information below is about IL_4V88_391
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67085.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
55

Unit IDs

7OSM|1|18S|G|109
7OSM|1|18S|U|110
7OSM|1|18S|U|111
7OSM|1|18S|A|112
*
7OSM|1|18S|U|302
7OSM|1|18S|U|303
7OSM|1|18S|U|304
7OSM|1|18S|C|305

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS4
40S ribosomal protein S4
Chain eS8
40S ribosomal protein S8
Chain uS17
40S ribosomal protein S11-B

Coloring options:


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