IL_7OSM_011

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

7OSM|1|18S|U|144, 7OSM|1|18S|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1521

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7OSM|1|18S|G|142
7OSM|1|18S|G|143
7OSM|1|18S|U|144
7OSM|1|18S|A|145
7OSM|1|18S|U|146
7OSM|1|18S|A|147
7OSM|1|18S|A|148
7OSM|1|18S|C|149
*
7OSM|1|18S|G|165
7OSM|1|18S|C|166
7OSM|1|18S|U|167
7OSM|1|18S|A|168
7OSM|1|18S|A|169
7OSM|1|18S|U|170
7OSM|1|18S|A|171
7OSM|1|18S|C|172

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS24

40S ribosomal protein S24

Chain eS6

40S ribosomal protein S6