IL_7OSM_014

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAUAAAAAUG*CAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_014 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.206

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7OSM|1|18S|A|213
7OSM|1|18S|G|214
7OSM|1|18S|A|215
7OSM|1|18S|U|216
7OSM|1|18S|A|217
7OSM|1|18S|A|218
7OSM|1|18S|A|219
7OSM|1|18S|A|220
7OSM|1|18S|A|221
7OSM|1|18S|U|242
7OSM|1|18S|G|243
*
7OSM|1|18S|C|250
7OSM|1|18S|A|251
7OSM|1|18S|U|252

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS4

40S ribosomal protein S4

Chain eS6

40S ribosomal protein S6

Chain uS17

40S ribosomal protein S11-B