3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GGG*CGAUUC
Length
9 nucleotides
Bulged bases
7OSM|1|18S|U|380
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_019 not in the Motif Atlas
Homologous match to IL_4V88_404
Geometric discrepancy: 0.0949
The information below is about IL_4V88_404
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_11347.3
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

7OSM|1|18S|G|363
7OSM|1|18S|G|364
7OSM|1|18S|G|365
*
7OSM|1|18S|C|376
7OSM|1|18S|G|377
7OSM|1|18S|A|378
7OSM|1|18S|U|379
7OSM|1|18S|U|380
7OSM|1|18S|C|381

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS4
40S ribosomal protein S4
Chain uS12
40S ribosomal protein S23
Chain uS4
BJ4_G0026100.mRNA.1.CDS.1

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3979 s