3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUA*UAAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_026 not in the Motif Atlas
Geometric match to IL_4V88_411
Geometric discrepancy: 0.1934
The information below is about IL_4V88_411
Detailed Annotation
Minor groove platform with extra cWW
Broad Annotation
Minor groove platform
Motif group
IL_46796.2
Basepair signature
cWW-tHS-cWW-cWW
Number of instances in this motif group
6

Unit IDs

7OSM|1|18S|G|516
7OSM|1|18S|U|517
7OSM|1|18S|A|518
*
7OSM|1|18S|U|533
7OSM|1|18S|A|534
7OSM|1|18S|A|535
7OSM|1|18S|C|536

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS24
40S ribosomal protein S24
Chain uS4
BJ4_G0026100.mRNA.1.CDS.1

Coloring options:


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