IL_7OSM_028

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_028 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1309

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

7OSM|1|18S|A|550
7OSM|1|18S|G|551
7OSM|1|18S|G|552
7OSM|1|18S|G|553
7OSM|1|18S|C|554
7OSM|1|18S|A|555
7OSM|1|18S|A|556
7OSM|1|18S|G|557
*
7OSM|1|18S|C|587
7OSM|1|18S|U|588

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS30

40S ribosomal protein S30

Chain uS4

BJ4_G0026100.mRNA.1.CDS.1

Chain uS5

40S ribosomal protein S2