IL_7OSM_037

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAA*UUAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_037 not in the Motif Atlas

Geometric match to IL_5J7L_006

Geometric discrepancy: 0.3625

The information below is about IL_5J7L_006

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

7OSM|1|18S|G|751
7OSM|1|18S|A|752
7OSM|1|18S|A|753
*
7OSM|1|18S|U|794
7OSM|1|18S|U|795
7OSM|1|18S|A|796
7OSM|1|18S|G|797
7OSM|1|18S|C|798

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS4

40S ribosomal protein S4

Chain uS17

40S ribosomal protein S11-B

Chain uS8

40S ribosomal protein S22-A