3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AUG*CGU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_048 not in the Motif Atlas
Geometric match to IL_6OL3_002
Geometric discrepancy: 0.2305
The information below is about IL_6OL3_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7OSM|1|18S|A|995
7OSM|1|18S|U|996
7OSM|1|18S|G|997
*
7OSM|1|18S|C|1007
7OSM|1|18S|G|1008
7OSM|1|18S|U|1009

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain 25S
Large subunit ribosomal RNA; LSU rRNA
Chain eS26
40S ribosomal protein S26
Chain uL2
60S ribosomal protein L2-B
Chain uS11
40S ribosomal protein S14-A

Coloring options:


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