IL_7OSM_049

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGA*UCUUUGG

Length

10 nucleotides

Bulged bases

7OSM|1|18S|C|1096, 7OSM|1|18S|U|1098, 7OSM|1|18S|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_049 not in the Motif Atlas

Homologous match to IL_4V88_437

Geometric discrepancy: 0.131

The information below is about IL_4V88_437

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62898.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7OSM|1|18S|C|1034
7OSM|1|18S|G|1035
7OSM|1|18S|A|1036
*
7OSM|1|18S|U|1095
7OSM|1|18S|C|1096
7OSM|1|18S|U|1097
7OSM|1|18S|U|1098
7OSM|1|18S|U|1099
7OSM|1|18S|G|1100
7OSM|1|18S|G|1101

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS27

40S ribosomal protein S27-A

Chain uS12

40S ribosomal protein S23

Chain uS15

40S ribosomal protein S13

Chain uS17

40S ribosomal protein S11-B

Chain uS5

40S ribosomal protein S2

Chain uS8

40S ribosomal protein S22-A