IL_7OSM_052

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_052 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1036

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7OSM|1|18S|G|1111
7OSM|1|18S|G|1112
7OSM|1|18S|A|1113
7OSM|1|18S|G|1114
7OSM|1|18S|U|1115
7OSM|1|18S|A|1116
7OSM|1|18S|U|1117
7OSM|1|18S|G|1118
*
7OSM|1|18S|U|1129
7OSM|1|18S|G|1130
7OSM|1|18S|A|1131
7OSM|1|18S|A|1132
7OSM|1|18S|A|1133
7OSM|1|18S|C|1134

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eL41

eL41

Chain uS12

40S ribosomal protein S23