IL_7OSM_059

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_059 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3971

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

7OSM|1|18S|A|1234
7OSM|1|18S|C|1235
7OSM|1|18S|A|1236
7OSM|1|18S|G|1237
*
7OSM|1|18S|C|1248
7OSM|1|18S|U|1249
7OSM|1|18S|U|1250
7OSM|1|18S|U|1251

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS31

Ubiquitin-40S ribosomal protein S31

Chain uS19

40S ribosomal protein S15