3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGG*CGA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_063 not in the Motif Atlas
Homologous match to IL_4V88_453
Geometric discrepancy: 0.2989
The information below is about IL_4V88_453
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.1
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
48

Unit IDs

7OSM|1|18S|U|1290
7OSM|1|18S|G|1291
7OSM|1|18S|G|1292
*
7OSM|1|18S|C|1323
7OSM|1|18S|G|1324
7OSM|1|18S|A|1325

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS17
BJ4_G0020710.mRNA.1.CDS.1
Chain uS2
40S ribosomal protein S0
Chain uS3
BJ4_G0045400.mRNA.1.CDS.1
Chain uS5
40S ribosomal protein S2

Coloring options:


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