IL_7OSM_065

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

7OSM|1|18S|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_065 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.3059

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7OSM|1|18S|C|1339
7OSM|1|18S|U|1340
7OSM|1|18S|A|1341
7OSM|1|18S|C|1342
*
7OSM|1|18S|G|1383
7OSM|1|18S|A|1384
7OSM|1|18S|G|1385

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain RACK

BJ4_G0022010.mRNA.1.CDS.1

Chain eS17

BJ4_G0020710.mRNA.1.CDS.1

Chain uS10

40S ribosomal protein S20

Chain uS9

BJ4_G0008010.mRNA.1.CDS.1