IL_7OSM_072

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7OSM|1|18S|C|1637, 7OSM|1|18S|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_072 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1172

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

7OSM|1|18S|C|1636
7OSM|1|18S|C|1637
7OSM|1|18S|G|1638
*
7OSM|1|18S|C|1764
7OSM|1|18S|A|1765
7OSM|1|18S|A|1766
7OSM|1|18S|G|1767

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain ASIT

Transfer RNA; tRNA

Chain PSIT

Transfer RNA; tRNA

Chain eL41

eL41

Chain eS26

40S ribosomal protein S26

Chain mRNA

MRNA