IL_7OSM_073

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_073 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1281

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OSM|1|18S|G|1638
7OSM|1|18S|C|1639
7OSM|1|18S|C|1640
7OSM|1|18S|C|1641
*
7OSM|1|18S|G|1760
7OSM|1|18S|U|1761
7OSM|1|18S|A|1762
7OSM|1|18S|A|1763
7OSM|1|18S|C|1764

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain 25S

Large subunit ribosomal RNA; LSU rRNA

Chain eL41

eL41

Chain mRNA

MRNA