IL_7OSM_082

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_082 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.1299

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7OSM|1|18S|C|1675
7OSM|1|18S|U|1676
7OSM|1|18S|C|1677
7OSM|1|18S|A|1678
*
7OSM|1|18S|U|1723
7OSM|1|18S|U|1724
7OSM|1|18S|U|1725
7OSM|1|18S|G|1726

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eL24

60S ribosomal protein L24-A

Chain eS6

40S ribosomal protein S6

Chain eS8

40S ribosomal protein S8