3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCGAAU*AAAC
Length
10 nucleotides
Bulged bases
7OSM|1|25S|G|1001
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_122 not in the Motif Atlas
Homologous match to IL_8C3A_043
Geometric discrepancy: 0.0797
The information below is about IL_8C3A_043
Detailed Annotation
C-loop with bulged stacked A's
Broad Annotation
C-loop
Motif group
IL_02509.3
Basepair signature
cWW-cWS-cWW-cWW-R-cSH-tWH-R
Number of instances in this motif group
6

Unit IDs

7OSM|1|25S|G|999
7OSM|1|25S|C|1000
7OSM|1|25S|G|1001
7OSM|1|25S|A|1002
7OSM|1|25S|A|1003
7OSM|1|25S|U|1004
*
7OSM|1|25S|A|1046
7OSM|1|25S|A|1047
7OSM|1|25S|A|1048
7OSM|1|25S|C|1049

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain AB
5S ribosomal RNA; 5S rRNA
Chain eL21
BJ4_G0003770.mRNA.1.CDS.1
Chain uL16
60S ribosomal protein L10
Chain uL18
60S ribosomal protein L5

Coloring options:


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