3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GACACCACAAAA*UGAAAAUGGAUGGCGC
Length
28 nucleotides
Bulged bases
7OSM|1|25S|C|1196, 7OSM|1|25S|A|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_133 not in the Motif Atlas
Geometric match to IL_5TBW_052
Geometric discrepancy: 0.0797
The information below is about IL_5TBW_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53762.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

7OSM|1|25S|G|1194
7OSM|1|25S|A|1195
7OSM|1|25S|C|1196
7OSM|1|25S|A|1197
7OSM|1|25S|C|1198
7OSM|1|25S|C|1199
7OSM|1|25S|A|1200
7OSM|1|25S|C|1201
7OSM|1|25S|A|1202
7OSM|1|25S|A|1203
7OSM|1|25S|A|1204
7OSM|1|25S|A|1205
*
7OSM|1|25S|U|1299
7OSM|1|25S|G|1300
7OSM|1|25S|A|1301
7OSM|1|25S|A|1302
7OSM|1|25S|A|1303
7OSM|1|25S|A|1304
7OSM|1|25S|U|1305
7OSM|1|25S|G|1306
7OSM|1|25S|G|1307
7OSM|1|25S|A|1308
7OSM|1|25S|U|1309
7OSM|1|25S|G|1310
7OSM|1|25S|G|1311
7OSM|1|25S|C|1312
7OSM|1|25S|G|1313
7OSM|1|25S|C|1314

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain AB
5S ribosomal RNA; 5S rRNA
Chain eL20
60S ribosomal protein L20
Chain eL33
BJ4_G0025510.mRNA.1.CDS.1
Chain eL40
Ubiquitin
Chain uL13
60S ribosomal protein L16-A
Chain uL16
60S ribosomal protein L10
Chain uL3
60S ribosomal protein L3
Chain uL30
60S ribosomal protein L7-A

Coloring options:


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